Genomic data of the Hyacinth Bean (Lablab purpureus)

Dataset type: Genomic, Transcriptomic
Data released on October 16, 2018

Lablab purpureus is an agriculturally, biologically, medicinally and economically important African orphan crop. Wikipedia states L. purpureus is variable due to extensive breeding in cultivation, but in general they are annual or short-lived perennial vines. The fruit is a legume pod variable in shape, size, and colour. It is usually several cm long and bright purple to pale green and contains up to four seeds. The seeds are white, brown, red, or black depending on the cultivar, sometimes with a white hilum. Wild plants have mottled seeds. The seed is about a cm long.
Wikipedia includes in its list of uses; the fruit and beans are edible if boiled well with several changes of the water; the leaves are eaten raw or cooked like spinach; the flowers can be eaten raw or steamed; the root can be boiled or baked for food and the seeds are used to make tofu and tempeh.
In Kenya, the bean is though to encourage lactation and has historically been the main dish for breastfeeding mothers. Here we present draft genome information of Lablab purpureus. The assembled genome of Lablab purpureus is 395 Mb, and we predict 20946 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.

Additional details

Read the peer-reviewed publication(s):

Chang, Y., Liu, H., Liu, M., Liao, X., Sahu, S. K., Fu, Y., … Liu, X. (2018). The draft genomes of five agriculturally important African orphan crops. GigaScience, 8(3). doi:10.1093/gigascience/giy152

Related datasets:

doi:10.5524/101056 IsPartOf doi:10.5524/100504

Additional information:

www.africanorphancrops.org

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Lablab_purpureus_leaf35936antaque Lablab purpureus Description:Genomic DNA extracted from leaf of a L...
Alternative names:hyacinth bean
Alternative accession-BioSample:SAMN09355696
...
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Lablab_purpureus_petal35936antaque Lablab purpureus Description:RNA extracted from petal of Lablab pur...
Alternative names:hyacinth bean
Alternative accession-BioSample:SAMN09355999
...
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Lablab_purpureus_sepal35936antaque Lablab purpureus Description:RNA extracted from sepal of Lablab pur...
Alternative names:hyacinth bean
Alternative accession-BioSample:SAMN09356001
...
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Lablab_purpureus_stem35936antaque Lablab purpureus Description:RNA extracted from stem of Lablab purp...
Alternative names:hyacinth bean
Alternative accession-BioSample:SAMN09356000
...
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Lablab_purpureus_young leaf35936antaque Lablab purpureus Description:RNA extracted from young leaf of Labla...
Alternative names:hyacinth bean
Alternative accession-BioSample:SAMN09356002
...
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Displaying 1-5 of 5 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Coding SequenceFASTA26.19 MB2018-08-20
Repeat sequenceGFF65.96 MB2018-08-20
otherarchive49.28 MB2018-08-20
Sequence assemblyFASTA379.73 MB2018-08-20
annotationGFF9.69 MB2018-08-20
annotationGFF17.98 KB2018-08-20
protein sequenceFASTA9.1 MB2018-08-20
otherarchive12.15 MB2018-08-20
annotationGFF107.45 KB2018-08-20
annotationGFF83.62 KB2018-08-20
Displaying 1-10 of 16 File(s).
Funding body Awardee Award ID Comments
Shenzhen Municipal Government of China No. JCYJ20150831201643396
Shenzhen Municipal Government of China No. JCYJ20150529150409546
State Key Laboratory of Agricultural Genomics No. 2011DQ782025
Guangdong Provincial Key Laboratory of Genome Read and Write No. 2017B030301011
Date Action
October 16, 2018 Dataset publish
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_petal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_stem
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_young leaf
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
November 12, 2018 Sample Attribute added : of Sample Lablab_purpureus_sepal
February 6, 2019 Manuscript Link added : 10.1093/gigascience/giy152