Genomic data of the Horseradish Tree (Moringa oleifera)

Dataset type: Genomic, Transcriptomic
Data released on October 16, 2018

Moringa oleifera is an agriculturally, biologically, medicinally and economically important African orphan crop. Wikipediastates M. oleifera is a fast-growing, drought-resistant tree, native to the southern foothills of the Western Ghats in southwestern India, and widely cultivated in tropical and subtropical areas where its young seed pods and leaves are used as vegetables, and many parts of the tree are used in traditional herbal medicine. It can also be used for water purification and hand washing.
Moringa trees have been used to combat malnutrition, especially among infants and nursing mothers.Moringa has numerous applications in cooking throughout its regional distribution. The fruits or seed pods, known as drumsticks, are a culinary vegetable commonly used in soups and curries. The leaves are also commonly eaten with many culinary uses, and the flowers are featured in some recipes as well.
Here we present draft genome information of Moringa oleifera. The assembled genome of Moringa oleifera is 217 Mb, and we predict 18451 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.

Additional details

Read the peer-reviewed publication(s):


Related datasets:

doi:10.5524/101058 IsPartOf doi:10.5524/100504

Additional information:

www.africanorphancrops.org

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Moringa_oleifera_dry_seed3735marangahorseradish treeMoringa oleifera Description:RNA extracted from dry seed of Moringa...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356013
...
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Moringa_oleifera_flower_bud3735marangahorseradish treeMoringa oleifera Description:RNA extracted from flower bud of Morin...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356014
...
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Moringa_oleifera_germinated_seed3735marangahorseradish treeMoringa oleifera Description:RNA extracted from germinated seed of ...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356015
...
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Moringa_oleifera_leaf3735marangahorseradish treeMoringa oleifera Description:Genomic DNA extracted from leaf of a M...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356003
...
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Moringa_oleifera_mature_leaf3735marangahorseradish treeMoringa oleifera Description:RNA extracted from mature leaf of Mori...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356016
...
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Moringa_oleifera_semi_mature_leaf3735marangahorseradish treeMoringa oleifera Description:RNA extracted from semi mature leaf of...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356017
...
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Moringa_oleifera_stem3735marangahorseradish treeMoringa oleifera Description:RNA extracted from stem of Moringa ole...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356018
...
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Moringa_oleifera_young_bark3735marangahorseradish treeMoringa oleifera Description:RNA extracted from young bark of Morin...
Alternative names:horseradish tree
Alternative accession-BioSample:SAMN09356019
...
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Displaying 1-8 of 8 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Coding SequenceFASTA23.56 MB2018-08-20
Repeat sequenceGFF23.46 MB2018-08-20
otherarchive40.16 MB2018-08-20
Sequence assemblyFASTA207.2 MB2018-08-20
annotationGFF8.99 MB2018-08-20
annotationGFF18.94 KB2018-08-20
protein sequenceFASTA7.82 MB2018-08-20
otherarchive12.28 MB2018-08-20
annotationGFF1.43 MB2018-08-20
annotationGFF42.38 KB2018-08-20
Displaying 1-10 of 18 File(s).
Funding body Awardee Award ID Comments
Shenzhen Municipal Government of China No. JCYJ20150831201643396
Shenzhen Municipal Government of China No. JCYJ20150529150409546
State Key Laboratory of Agricultural Genomics No. 2011DQ782025
Guangdong Provincial Key Laboratory of Genome Read and Write No. 2017B030301011
Date Action
October 16, 2018 Dataset publish
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_dry_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_flower_bud
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_germinated_seed
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_semi_mature_leaf
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_stem
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
November 12, 2018 Sample Attribute added : of Sample Moringa_oleifera_young_bark
December 4, 2018 Relationship added : DOI 100504
February 6, 2019 Manuscript Link added : 10.1093/gigascience/giy152