Genomic data of Nanmaohu Park Moraceae plant specimen, RL0001
Dataset type: Imaging, Genomic
Data released on January 25, 2019
Liu H; Wei J; Yang T; Mu W; Song B; Yang T; Fu Y; Wang X; Hu G; Li W; Zhou H; Chang Y; Chen X; Chen H; Cheng L; He X; Cai H; Cai X; Wang M; Li Y; Yang J; Wang Y; Mu R; Liu J; Zhao J; Huang Z; Liu X (2019): Genomic data of Nanmaohu Park Moraceae plant specimen, RL0001 GigaScience Database. http://dx.doi.org/10.5524/101064
We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).
Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.
There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level.
This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001751. Preliminary identification is that it is of the family Moraceae.
The K-mer distribution of the sequencing predicted the genome size to be 688188000bp. We have generated 68040000000bp of data, which gives a theoretical coverage of 98.9x.
Read the peer-reviewed publication(s):
Accessions (data generated as part of this study):
|Sample ID||Taxonomic ID||Common Name||Genbank Name||Scientific Name||Sample Attributes|
|RL0001||3487||mulberry family||Moraceae|| Description:DNA extracted from leaves of Moraceae ...|
Geographic location (country and/or sea,region):Na...
Geographic location (latitude and longitude):restr...
... Description:DNA extracted from leaves of Moraceae sp. RL0001 (CL100026894_L01_1)
Geographic location (country and/or sea,region):Nanmao Lake Park, Ruili, Yunnan Prov., China
Geographic location (latitude and longitude):restricted access
Environment (biome):Park [ENVO:00000562]
Environment (feature):botanical garden [ENVO:00010624]
Source material identifiers:HCNGB:RUILI:HCNGB_00001751
Plant body site:leaf
Sample contact:Tuo Yang
Collected by:Jin-Pu Wei, Xue-Bing Wang, He-Chen Cai, Xue-Fei He
Unchecked chinese species name:垂叶榕
Estimated genome size:656.31 Mb
Volume of sequence:68.04 GB
Average sequence coverage:98.9