Genomic data of Nanmaohu Park Rutaceae plant specimen, RL0002

Dataset type: Imaging, Genomic
Data released on January 25, 2019

Liu H; Wei J; Yang T; Mu W; Song B; Yang T; Fu Y; Wang X; Hu G; Li W; Zhou H; Chang Y; Chen X; Chen H; Cheng L; He X; Cai H; Cai X; Wang M; Li Y; Yang J; Wang Y; Mu R; Liu J; Zhao J; Huang Z; Liu X (2019): Genomic data of Nanmaohu Park Rutaceae plant specimen, RL0002 GigaScience Database. http://dx.doi.org/10.5524/101065

DOI10.5524/101065

We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).
Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.
There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level.
This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001914. Preliminary identification is that it is of the family Rutaceae.
The K-mer distribution of the sequencing predicted the genome size to be 826374000bp. We have generated 70640000000bp of data, which gives a theoretical coverage of 85.5x.

Additional details

Read the peer-reviewed publication(s):


Accessions (data generated as part of this study):

BioProject: PRJNA438407





Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
RL000223513rue family Rutaceae Description:DNA extracted from leaves of Rutaceae ...
Geographic location (country and/or sea,region):Na...
Geographic location (latitude and longitude):restr...
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Displaying 1-1 of 1 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
RL0002ImageUNKNOWN8.65 MB2018-10-22
RL0002ImageUNKNOWN15.06 MB2018-10-22
RL0002ImageUNKNOWN10.26 MB2018-10-22
RL0002ImageUNKNOWN7.3 MB2018-10-22
RL0002Genome sequenceFASTA156.66 KB2018-10-22
Displaying 1-5 of 5 File(s).
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