Genome data of the bird of paradise, Lycocorax pyrrhopterus

Dataset type: Genomic
Data released on January 09, 2019

Prost S; Armstrong EE; Nylander J; Thomas GWC; Suh A; Petersen B; Dalen L; Benz BW; Blom MPK; Palkopoulou E; Ericson PGP; Irestedt M (2019): Genome data of the bird of paradise, Lycocorax pyrrhopterus GigaScience Database. http://dx.doi.org/10.5524/102158

DOI10.5524/102158

The Lycocorax pyrrhopterus, common name, paradise-crow or silky crow, is a medium-sized crow-like bird-of-paradise. One of the few monogamous birds-of-paradise, the paradise-crow is endemic to lowland forests of North Maluku in Indonesia. The diet consists mainly of fruits and arthropods. The paradise-crow is approximately 34 cm long with all-dark, soft and silky plumage. It has a black bill, crimson eyes, and a call reminiscent of a dog's bark. Both sexes are similar; the female is slightly smaller than the male. The breeding season is approximately December to June, (Wikipedia).
Here we present the de novo assembled genome totalling 1.07Gb in length, with 3216 scaffolds having an N50 of 4.2Mb, annotated with 17,023 protein coding genes and BUSCO analysis demonstrating a 93.8% completeness.

Additional details

Read the peer-reviewed publication(s):


Related datasets:

doi:10.5524/102158 IsPartOf doi:10.5524/100521

Accessions (data generated as part of this study):

SRA: SRR8306850
SRA: SRR8306849
SRA: SRR8306848
SRA: SRR8306856
SRA: SRR8306857
BioProject: PRJNA506819





Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
ZMUC149607681192  Lycocorax pyrrhopterus Description:DNA extracted from Lycocorax pyrrhopte...
Analyte type:DNA
Alternative accession-BioSample:SAMN10474333
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Displaying 1-1 of 1 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
BUSCOTAR120.83 MB2018-12-03
Genome sequenceFASTA1.02 GB2018-12-03
annotationGFF394.84 MB2018-12-03
protein sequenceFASTA10.25 MB2018-12-03
transcriptome sequenceFASTA27.94 MB2018-12-03
readmeTEXT1.55 KB2018-12-03
Displaying 1-6 of 6 File(s).
Funding body Awardee Award ID Comments
Swedish Research Council PGP Ericson 621-2013-5161
Swedish Research Council M Irestedt 621-2014-5113
Date Action
January 9, 2019 Dataset publish
February 6, 2019 Manuscript Link added : 10.1093/gigascience/giz003
January 8, 2021 Link added : BioProject:PRJNA506819
January 28, 2021 Metadata for file type, format and extension of Lycocorax_pyrrhopterus_busco_results.tar.gz corrected
June 2, 2021 Link updated : SRA:SRR8306850
June 2, 2021 Link updated : SRA:SRR8306849
June 2, 2021 Link updated : SRA:SRR8306848
June 2, 2021 Link updated : SRA:SRR8306856
June 2, 2021 Link updated : SRA:SRR8306857