Genomic data of the rosy bitterling, Rhodeus ocellatus

Dataset type: Genomic
Data released on July 14, 2020

Fan G; Song Y; Yang L; Huang X; Zhang S; Zhang M; Yang X; Chang Y; Zhang H; Li Y; Liu S; Yu L; Chu J; Seim I; Feng C; Near TJ; Wing RA; Wang W; Wang K; Wang J; Xu X; Yang H; Liu X; Chen N; He S (2020): Genomic data of the rosy bitterling, Rhodeus ocellatus GigaScience Database. http://dx.doi.org/10.5524/102192

DOI10.5524/102192

The rosy bitterling or Tairiku baratanago (Rhodeus ocellatus) is a small freshwater fish belonging to the family Cyprinidae (carp), native to East Asia from the Amur River basin to the Pearl River basin. Females are about 4–5 cm (1.6–2.0 in) long and males are 5–8 cm (2.0–3.1 in). Their bodies are flat with an argent-colored luster. However, males change to a reddish (sometimes purple) color during the spawning season (March to September) which functions to attract females. This reddish color is similar to the color of a red rose, which is why it is called a rosy bitterling.
Rosy bitterlings live in ponds (reservoirs) where freshwater mussels are abundant. Farm ponds are an important habitat for not only rosy bitterlings, but also mussels and plankton. Eggs grow in the mussels' gills and juveniles stay inside the mussel about 15 to 30 days after fertilization. Eggs hatch after about three days when juveniles are about 2.8 mm long. The body has a unique shape resembling the bud of a matsutake mushroom. Juveniles swim out of the mussel from the margin of the excurrent siphon. At this point, juveniles are about 7.5 mm long and about the same shape as adults.Usually, juveniles grow around 40–50 mm within one year, when they become adults. Here we present the genome, which has an estimated genome size of 850.5Mb, scaffold N50 4,198,183, contig N50 4,198,183

Additional details

Related datasets:

doi:10.5524/102192 IsPartOf doi:10.5524/100661

Additional information:

http://fish10k.genomics.cn/

Accessions (data generated as part of this study):

BioProject: PRJNA597275

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SAMN1367465075330  Rhodeus ocellatus Description:DNA extracted from the muscle structur...
Common name:rosy bitterling
Alternative names:not applicable
...
+
Displaying 1-1 of 1 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
readme.txtTEXT2.61 KB2020-07-14
Coding sequenceFASTA36.33 MB2020-04-25
AnnotationGFF13.77 MB2020-04-30
Protein sequenceFASTA13.53 MB2020-04-30
BUSCOTEXT0.72 KB2020-05-28
Genome sequenceFASTA860.71 MB2020-04-08
Displaying 1-6 of 6 File(s).
Funding body Awardee Award ID Comments
Scientific and Technological Innovation of China X Liu 2018YFD0900301-05 Blue Granary
Date Action
July 14, 2020 Dataset publish
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650
July 17, 2020 Sample Attribute added : of Sample SAMN13674650