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Data released on July 31, 2017

Supporting data for "Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes"

Adamowicz, S, J; Fu, J; Liu, S; Meusemann, K; Mitterboeck, T, F; Song, W; Zhang, R; Zhou, X (2017): Supporting data for "Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes" GigaScience Database. http://dx.doi.org/10.5524/100334 RIS BibTeX Text

The evolution of powered flight is a major innovation that has facilitated the success of insects. Previously, studies of birds, bats, and insects have detected molecular signatures of differing selection regimes in energy-related genes associated with flight evolution and/or loss. Here, using DNA sequences from over 1,000 nuclear and mitochondrial protein-coding genes obtained from insect transcriptomes, we conduct a broader test of which gene categories display positive and relaxed selection at the origin of flight as well as with multiple independent losses of flight.
We detected a number of categories of nuclear genes more often under positive selection in the lineage leading to the winged insects (Pterygota), related to catabolic processes such as protease, as well as splicing-related genes. Flight loss was associated with relaxed selection signatures in splicing genes, mirroring the results for flight evolution. Similar to previous studies of flight loss in various animal taxa, we observed consistently higher non-synonymous-to-synonymous substitution ratios in mitochondrial genes of flightless lineages, indicative of relaxed selection in energy-related genes. While oxidative phosphorylation genes were not detected as being under selection with the origin of flight specifically, they were most often detected as being under positive selection in holometabolous insects as compared with other insect lineages.

Contact Submitter

Related manuscripts:

doi:10.1093/gigascience/gix073

Accessions (data not in GigaDB):

BioProject: PRJNA183205

Projects:


Keywords:

insect transcriptomes flight flight loss positive selection 1KITE project molecular evolution 

Transcriptomic

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Funding:

  • Funding body - Natural Sciences and Engineering Research Council of Canada
  • Award ID - 386591-2010
  • Awardee - SJ Adamowicz
  • Funding body - Natural Sciences and Engineering Research Council of Canada
  • Award ID - 400479
  • Awardee - J Fu
  • Funding body - Natural Sciences and Engineering Research Council of Canada
  • Comment - Alexander Graham Bell Canada Graduate Scholarship
  • Awardee - TF Mitterboeck
  • Funding body - University of Guelph
  • Comment - Integrative Biology PhD Award
  • Awardee - TF Mitterboeck
  • Funding body - University of Guelph
  • Comment - Dean’s Tri-council Scholarship
  • Awardee - TF Mitterboeck
  • Funding body - University of Guelph
  • Comment - Ontario Graduate Fellowship
  • Awardee - TF Mitterboeck
  • Funding body - University of Guelph
  • Comment - Ontario Graduate Fellowship
  • Awardee - TF Mitterboeck
  • Funding body - China Agricultural University
  • Award ID - 2017QC114
  • Awardee - Xin Zhou

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SRS462912108931 brown planthopperNilaparvata lugens Geographic location (country and/or sea,region):Switzerland: Labstock, University of Bern, Bern
Collection date:Fri Oct 07 00:00:00 HKT 2011
SRS462913537464Notostira elongata Geographic location (country and/or sea,region):Ge...
Authority:R. Peters
Collection date:Tue May 17 00:00:00 HKT 2011
...
+
SRS462914289462Occasjapyx japonicus Geographic location (country and/or sea,region):Ja...
Authority:K. Sekiya
Collection date:Fri Jun 10 00:00:00 HKT 2011
...
+
SRS4629151323542Okanagana villosa Geographic location (country and/or sea,region):USA: California, Tuolumne County, Stanislaus National Forest, Sonora Pass
Authority:K. Hill, D. Marshall
Collection date:Fri Aug 12 00:00:00 HKT 2011
SRS462916222816Orussus abietinus Geographic location (country and/or sea,region):Ge...
Authority:O. Niehuis
Collection date:Sat Apr 23 00:00:00 HKT 2011
...
+
SRS462917446453Osmylus fulvicephalus Geographic location (country and/or sea,region):It...
Authority:U. Aspock, H. Aspock, D. Zimmermann
Collection date:Wed Jul 29 00:00:00 HKT 2009
...
+
SRS46291852562  Panorpa vulgaris Geographic location (country and/or sea,region):Ge...
Authority:B. Misof
Collection date:Tue Jun 07 00:00:00 HKT 2011
...
+
SRS462919299019Parides eurimedes Geographic location (country and/or sea,region):United Kingdom: Labstock, London Pupae Supplies Limited (OXFLY), The Granary, Manor Farm, Horspath, Oxford
Collection date:Mon Nov 28 00:00:00 HKT 2011
Developmental stage:adult
SRS4629206978 American cockroachPeriplaneta americana Geographic location (country and/or sea,region):Ge...
Authority:K. Schatte
Collection date:Mon Nov 11 00:00:00 HKT 2013
...
+
SRS462921227363Perla marginata Geographic location (country and/or sea,region):Ge...
Authority:J. Dambach, R. Peters
Collection date:Mon May 16 00:00:00 HKT 2011
...
+
Displaying 61-70 of 100 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
DirectoryUNKNOWN592 KB2017-07-21
DirectoryUNKNOWN1.2 MB2017-07-21
DirectoryUNKNOWN184 KB2017-07-21
DirectoryUNKNOWN1.8 MB2017-07-21
DirectoryUNKNOWN76 KB2017-07-21
AlignmentsUNKNOWN18.4 KB2017-07-21
AlignmentsFASTA46.54 KB2017-07-21
AlignmentsUNKNOWN4.96 KB2017-07-21
AlignmentsFASTA15.79 KB2017-07-21
AlignmentsUNKNOWN41.5 KB2017-07-21
Displaying 1-10 of 1571 File(s).

History:

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