Help Login Create account

Data released on May 04, 2018

Supporting data for "De novo genome assembly of the red silk cotton tree (Bombax ceiba)".

Gao, Y; Wang, H; Liu, C; Chu, H; Dai, D; Song, S; Yu, L; Han, L; Fu, Y; Tian, B; Tang, L (2018): Supporting data for "De novo genome assembly of the red silk cotton tree (Bombax ceiba)". GigaScience Database. http://dx.doi.org/10.5524/100445 RIS BibTeX Text

Bombax ceiba L. (the red silk cotton tree) is a large deciduous tree that is distributed in tropical and sub-tropical Asia, and northern Australia. It has great economic and ecological importance, with several applications in industry and traditional medicine in many Asian countries. To facilitate the further utilization of this plant resource, we present here the draft genome sequence for B. ceiba.
We assembled a relatively intact genome of B. ceiba by using PacBio single-molecule sequencing and BioNano optical mapping technologies. The final draft genome is approximately 895 Mb long, with contig and scaffold N50 sizes of 1.0 Mb and 2.06 Mb, respectively.
The high-quality draft genome assembly of B. ceiba will be a valuable resource enabling further genetic improvement and more effective use of this tree species.

Contact Submitter

Accessions (data included in GigaDB):

PROJECT: PRJNA429932

Keywords:

bombax ceiba genome assembly evolution 

Genomic, Transcriptomic

http://gigadb.org/images/data/cropped/100445.jpg

Funding:

  • Funding body - National Natural Science Foundation of China
  • Award ID - 31460561
  • Awardee - L Tang
  • Funding body - National Natural Science Foundation of China
  • Award ID - 31760103
  • Awardee - Y Gao
  • Funding body - National Natural Science Foundation of China
  • Award ID - 31460179
  • Awardee - H Wang
  • Funding body - National Natural Science Foundation of China
  • Award ID - 31660680
  • Awardee - L Yu
  • Funding body - Applied Basic Research Key Project of Yunnan
  • Award ID - 2017FD145
  • Awardee - Y Gao

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
BC3_145325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:DNA from a leaf of Bombax ceiba isola...
Alternative names:Indian kapok
Analyte type:DNA
...
+
BC4_145325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the calyx of Bombax ceiba is...
Alternative names:Indian kapok
Analyte type:RNA
...
+
BC4_245325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the petal of Bombax ceiba is...
Alternative names:Indian kapok
Analyte type:RNA
...
+
BC4_345325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the stamen of Bombax ceiba i...
Alternative names:Indian kapok
Analyte type:RNA
...
+
BC4_445325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the pistil of Bombax ceiba i...
Alternative names:Indian kapok
Analyte type:RNA
...
+
BC4_545325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the bark of Bombax ceiba iso...
Alternative names:Indian kapok
Analyte type:RNA
...
+
BC5_145325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the calxy of Bombax ceiba is...
Alternative names:Indian kapok
Analyte type:RNA
...
+
BC6_145325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the bud of Bombax ceiba isol...
Alternative names:Indian kapok
Analyte type:RNA
...
+
BC6_345325red silk-cotton treeIndian kapokBombax ceiba Descriptiopn:RNA from the root of Bombax ceiba iso...
Alternative names:Indian kapok
Analyte type:RNA
...
+
Displaying 1-9 of 9 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
Data Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDData TypeFile FormatSizeRelease Date 
annotationFASTA43.11 KB2018-04-25
annotationIPR3.21 MB2018-04-25
annotationIPR1.28 MB2018-04-25
annotationKEGG895.33 KB2018-04-25
annotationFASTA5.82 MB2018-04-25
annotationFASTA7.86 MB2018-04-25
annotationGFF44.02 MB2018-04-25
annotationGFF61.17 MB2018-04-25
Repeat sequenceFASTA18.42 MB2018-04-25
ReadmeTEXT1.83 KB2018-04-25
Displaying 11-20 of 22 File(s).

History:

+

Other datasets you might like: