Begonia fuchsioides (B. fuchsioides) is non-nodulating closest relative of Datiscaceae, native to Northern South America.DNA was collected from leaves of the shrub in the Nymphenburg Botanical garden were used.We sequenced the genome to a depth of approximately 189X. The assembled scaffolds of high quality sequences total 374MB, with the contig and scaffold N50 values of 29kb and 154kb respectively. We identified 51,638 protein-coding genes with a mean length of 1.141kb

Keywords:

Additional details

Related datasets:

doi:10.5524/101043 IsSupplementTo doi:10.5524/100300

Accessions (data included in GigaDB):

BioProject: PRJNA374770

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Begonia fuchsioides genome200001  Begonia fuchsioides Description:DNA extracted from the leaf of Begonia...
Analyte type:DNA
Project name:International Consortium on Evolution...
...
+
Begonia fuchsioides leaf RNA200001  Begonia fuchsioides Description:RNA extracted from leaf of Begonia fuc...
Analyte type:RNA
Project name:International Consortium on Evolution...
...
+
Begonia fuchsioides root RNA200001  Begonia fuchsioides Description:RNA extracted from root of Begonia fuc...
Analyte type:RNA
Project name:International Consortium on Evolution...
...
+
Displaying 1-3 of 3 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Begonia fuchsioides genomeCoding sequenceFASTA58.22 MB2018-06-01
Begonia fuchsioides genomeSequence assemblyFASTA357.79 MB2018-06-01
otherFASTA3.5 MB2018-06-01
otherGFF1.33 MB2018-06-01
otherFASTA1.21 MB2018-06-01
otherFASTA483.02 KB2018-06-01
otherUNKNOWN8.73 MB2018-06-01
Begonia fuchsioides genomeAnnotationGFF21.24 MB2018-06-01
Begonia fuchsioides genomeProtein sequenceFASTA19.92 MB2018-06-01
otherFASTA7.09 MB2018-06-01
Displaying 1-10 of 11 File(s).
Date Action
July 23, 2018 Dataset publish